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Wed, Oct 14, 2026 / Ideas for a clearer worldINDEPENDENT INSIGHTS · PRACTICAL TOOLS · EXPLAINERS
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Basics

Basics

A REST API for Predicting

That’s where clearly separating training and prediction comes in handy. If we saved our feature engineering methods and…

August 13, 2021 · Taylor Emma
Basics

Filtering and Processing Data

Data is retrieved from snapshots from the RCSB PDB repository. Each file is imported into a single table raw_pdb in…

August 13, 2021 · Taylor Emma
Basics

NR Format

This is a list of non-redundant (NR) chain PDB sets. Its snapshots can be found at ftp.ncbi.nih.gov/mmdb/nrtable/. Its purpose…

August 13, 2021 · Taylor Emma
Basics

Materials and Methods

In order to accomplish this goal, the first step is to gather data from rcsb.org. That site contains downloadable PDB structures…

August 13, 2021 · Taylor Emma
Basics

Running and Testing with Insomnia

Insomnia is a decent REST client with a good free version. The best practice is, of course, to include…

August 13, 2021 · Taylor Emma